Reference

All functions
acealanme3d	Hills from 30 ns metadynamics of AceAlaNme in water with three collective variable
feprof(<minima3d>)	Calculate free energy profile for minima3d object
fes(<hillsfile3d>)	Calculate 3D free energy surface by Bias Sum algorithm
fes2(<hillsfile3d>)	Calculate 3D free energy surface by conventional algorithm
fesminima(<fes3d>)	Find free energy minima in the fes3d object
fespoint(<hillsfile3d>)	Calculate free energy at given point in the CV space
head(<hillsfile3d>)	Print first n lines of hillsfile3d
max(<fes3d>)	Calculate maximum of 3D free energy surface
min(<fes3d>)	Calculate minimum of 3D free energy surface
oneminimum(<fes3d>)	Creates one ad hoc 3D free energy minimum for a fes object
plot(<fes3d>)	Plot 3D free energy surface object
plot(<hillsfile3d>)	Plot hillsfile3d object
plot(<minima3d>)	Plot minima3d object
plotheights(<hillsfile3d>)	Plot evolution of heights of hills in hillsfile3d object
print(<fes3d>)	Print minimum and maximum of 3D free energy surface
print(<hillsfile3d>)	Print hillsfile3d
print(<minima3d>)	Print minima3d object
read.hills3d()	Read 3D HILLS from Plumed
read.plumed3d()	Read 3D free energy surface from PLUMED sum_hills
summary(<fes3d>)	Print summary of 3D free energy surface
summary(<hillsfile3d>)	Print summary for hillsfile3d
summary(<minima3d>)	Print minima3d object summary
tail(<hillsfile3d>)	Print last n lines of hillsfile3d